Common Side Effects of Fertility Medications

Posted on January 28, 2026 by Inception Fertility

Fertility medications are essential tools in helping patients conceive, but they can also bring physical and emotional changes. We’ve put together this quick guide to understanding what these medications do, why side effects occur, and how to manage them to make your treatment journey smoother and less stressful.

What Are Fertility Medications and Why Are They Used?

Fertility medications regulate hormones, stimulate egg development, and optimize timing for conception. They are commonly used in intrauterine insemination (IUI), in vitro fertilization (IVF), and for patients with ovulatory disorders.

The most commonly prescribed medications include:

  • Clomiphene Citrate (Clomid) & Letrozole – Oral medications that encourage ovulation by influencing estrogen levels.

  • Gonadotropins (FSH, LH) – Injectable hormones that stimulate the ovaries to produce multiple follicles.

  • Human Chorionic Gonadotropin (hCG) – Triggers final egg maturation and ovulation before retrieval.

  • GnRH Agonists/Antagonists (e.g., Lupron, Cetrotide) – Prevent premature ovulation and help synchronize cycles.

  • Adjunct Medications – Antibiotics, steroids, aspirin, or heparin for infection prevention and implantation support.

Common Side Effects and Why They Occur

Clomiphene Citrate & Letrozole

  • Hot flashes: These drugs alter estrogen levels, which can mimic menopausal symptoms.

  • Headaches: Hormonal fluctuations affect blood vessels and neurotransmitters.

  • Mood swings: Estrogen changes can influence serotonin and mood regulation.

  • Mild bloating: Ovarian stimulation can cause temporary fluid retention.

  • Visual disturbances (rare): Estrogen receptor activity may affect eye tissues.

Gonadotropins

  • Injection site irritation: Caused by repeated subcutaneous injections.

  • Abdominal bloating: Ovaries enlarge as multiple follicles develop.

  • Breast tenderness: Increased estrogen from follicle growth affects breast tissue.

  • Mood changes: Hormonal surges impact emotional regulation.

  • Ovarian Hyperstimulation Syndrome (OHSS) risk: High estrogen and vascular permeability lead to fluid shifts.

hCG

  • Abdominal discomfort: Stimulates final follicle maturation, increasing ovarian size.

  • Fluid retention: hCG can influence vascular permeability.

  • OHSS risk: Amplifies estrogen effects when combined with gonadotropins.

GnRH Agonists/Antagonists

  • Headaches & fatigue: Suppression of natural hormone cycles affects neurotransmitters.

  • Hot flashes: Lower estrogen levels mimic menopausal symptoms.

  • Mood changes: Hormonal suppression impacts brain chemistry.

Adjunct Medications

  • Antibiotics: Disrupt gut flora, causing nausea or diarrhea.

  • Steroids: Affect metabolism and mood through cortisol pathways.

  • Aspirin/Heparin: Thin blood, leading to bruising or mild bleeding risk.

When Should You Be Concerned?

Please seek immediate medical attention for:

  • Severe abdominal pain or rapid weight gain, as this may be a sign of OHSS

  • Shortness of breath or chest pain

  • Allergic reactions (rash, swelling, difficulty breathing)

  • Persistent nausea, vomiting, or dehydration

  • Severe headaches or vision changes

Strategies to Manage Side Effects

  • Stay Hydrated: This can reduce bloating and supports kidney function.

  • Balanced Diet: Focus on protein-rich meals and limit high-sodium foods.

  • Gentle Exercise: Walking or light yoga improves circulation and mood.

  • Over-the-Counter Relief: For headaches or mild cramps (with physician approval).

  • Track Symptoms: Keep a journal to share with your care team for better guidance.

FAQs About Fertility Medication Side Effects

1. Can fertility medications cause weight gain?
Yes, mild weight gain can occur due to fluid retention and hormonal changes. It’s usually temporary.

2. Are mood swings normal during treatment?
Yes, hormonal fluctuations can affect mood. If symptoms feel overwhelming, talk to your care team.

3. How long do side effects last?
Most side effects resolve after stopping medication or completing the cycle.

4. What is OHSS and how do I know if I have it?
Ovarian Hyperstimulation Syndrome is a rare but serious condition causing severe bloating, pain, and rapid weight gain. Contact your doctor immediately if these occur.

5. Can I take pain relievers for headaches?
Yes, but only with your doctor’s approval to ensure safety during treatment.

Your Next Step: Partner With IFI for Personalized Care

At Indiana Fertility Institute (IFI), your safety and comfort are our top priorities. If you have questions about fertility medications or want to discuss your treatment options, schedule a consultation today.

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